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Cytely turns biological data into standardized, reproducible measurement. Go from sample to auditable results faster, with higher quality and unparalleled ease.

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Reproducible results

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Cytely interface dashboard showing data-driven microscopy

Get started immediately Cytely Advantage Ready-to-go assays

How many of my cells have taken up the prey?

Are different cell phenotypes driving distinct uptake patterns?

How much of the prey is associated with cells and how much is outside?

Are the cells that have phagocytosed the prey evenly spread out?

Are the cells that have taken up the most prey morphologically different from other cells?

How evenly is the prey phagocytosed?

How can I image rare events without missing them?

How do I ensure my analysis is unbiased and reproducible?

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Analysis in Minutes, Not Weeks

Forget complex parameter tuning and building analysis pipelines. Cytely automatically identifies the cells and objects in your sample with minimal...

Explore Instantly & Interactively

Cytely goes beyond data collection—it turns complex image data into immediate insight. Once analysis is complete, you're presented with a fully...

Works With Your Existing Microscope

Continue using your existing microscope setup. Cytely integrates seamlessly into your imaging workflow: scan broadly, upload your data, and let Cytely...

Close the Loop with Smart Microscopy

Identify populations of interest through gating and send their coordinates back to the microscope for high-resolution or multi-modal follow-up...

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Cytely Advantage

Built for Spatial Single-Cell Discovery

Cytely analyzes individual cells and objects at true single-cell resolution, retaining spatial and subcellular context. This is essential for studying...

No-Code Segmentation

Cytely's robust segmentation is powered by pre-trained AI, automatically identifying and profiling cells, debris, and subcellular structures. No...

Visual Gating

Dive deeper into your data with an image flow cytometry-like experience using data from the initial DIA scan. Plot any measured morphological or...

Share It. Reproduce It. Build on It.

Cytely lets you share complete experiments, raw data, gates, images, and plots, in a single secure link. Collaborators, reviewers, or auditors can...

Ready-to-Go Assays

Pre-validated measurement workflows for the assays your team runs every day

Phagocytosis Assay

Move beyond qualitative observations. Cytely provides ready-made analysis workflows for complex processes like phagocytosis. Automatically identify interacting cells (e.g., phagocytes and prey) from the initial scan, count events, and calculate key metrics like Multiplicity of Prey (MOP) and Association Percentage.

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Rapid Cell Count & Classification

Cytely enables fast quantification of cell populations and contaminants based on morphology and...

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Transfection Efficiency Analysis

Identify transfected cells based on intensity thresholds, co-localization, or nuclear vs cytosolic...

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And More…

From co-culture assays to rare cell detection, Cytely supports flexible, user-defined workflows...

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See Cytely in Action

Preview of shared phagocytosis dataset in Cytely

Explore a High-Resolution Phagocytosis Dataset

See Cytely in action with real phagocytosis data. Interact with the analysis, explore gating, and see what reproducible measurement looks like in practice.

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Scientific Foundation

Powered by Data-Driven Microscopy, the peer-reviewed framework behind Cytely's approach to reproducible, automated measurement.

Visual abstract of the Data-Driven Microscopy paper

Cell Rep Methods. 2023 Mar 6;3(3):100419. doi: 10.1016/j.crmeth.2023.100419.

Data-driven microscopy allows for automated context-specific acquisition of high-fidelity image data.

Oscar André, Johannes Kumra Ahnlide, Nils Norlin, Vinay Swaminathan, Pontus Nordenfelt.

Read Full Paper (PMC10088093)

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